There is broad interest to improve the reproducibility of published research. We …
There is broad interest to improve the reproducibility of published research. We developed a survey tool to assess the availability of digital research artifacts published alongside peer-reviewed journal articles (e.g. data, models, code, directions for use) and reproducibility of article results. We used the tool to assess 360 of the 1,989 articles published by six hydrology and water resources journals in 2017. Like studies from other fields, we reproduced results for only a small fraction of articles (1.6% of tested articles) using their available artifacts. We estimated, with 95% confidence, that results might be reproduced for only 0.6% to 6.8% of all 1,989 articles. Unlike prior studies, the survey tool identified key bottlenecks to making work more reproducible. Bottlenecks include: only some digital artifacts available (44% of articles), no directions (89%), or all artifacts available but results not reproducible (5%). The tool (or extensions) can help authors, journals, funders, and institutions to self-assess manuscripts, provide feedback to improve reproducibility, and recognize and reward reproducible articles as examples for others.
Library Carpentry lesson: An introduction to Git. What We Will Try to …
Library Carpentry lesson: An introduction to Git. What We Will Try to Do Begin to understand and use Git/GitHub. You will not be an expert by the end of the class. You will probably not even feel very comfortable using Git. This is okay. We want to make a start but, as with any skill, using Git takes practice. Be Excellent to Each Other If you spot someone in the class who is struggling with something and you think you know how to help, please give them a hand. Try not to do the task for them: instead explain the steps they need to take and what these steps will achieve. Be Patient With The Instructor and Yourself This is a big group, with different levels of knowledge, different computer systems. This isn’t your instructor’s full-time job (though if someone wants to pay them to play with computers all day they’d probably accept). They will do their best to make this session useful. This is your session. If you feel we are going too fast, then please put up a pink sticky. We can decide as a group what to cover.
This lesson is part of Software Carpentry workshops and teach an introduction …
This lesson is part of Software Carpentry workshops and teach an introduction to plotting and programming using python. This lesson is an introduction to programming in Python for people with little or no previous programming experience. It uses plotting as its motivating example, and is designed to be used in both Data Carpentry and Software Carpentry workshops. This lesson references JupyterLab, but can be taught using a regular Python interpreter as well. Please note that this lesson uses Python 3 rather than Python 2.
In the fall of 2021, students in Pseudoscience courses started creating this …
In the fall of 2021, students in Pseudoscience courses started creating this open educational resource (OER), which has been built upon by subsequent classes. Our intention is to create a free textbook for this course that might also be used by students of critical thinking elsewhere and of all ages, whether in a classroom or not. Our growing, interactive textbook employs the Paul-Elder Model and other critical-thinking resources, and is freely available to all, learners and educators alike.
The topic of pseudoscience offers a rewarding way for students to learn the value of thinking critically, even as they get to argue things, like Flat Earth Theory and astrology, that may seem trivial at first. At a time when truth is understood as largely subjective, we have, not surprisingly, seen a resurgence in the popularity of pseudosciences and conspiracy theories, which many consider to hold significant truth value, just as valid as physical evidence. It is our aim here to demonstrate the reasoned analysis process — weighing truth, belief, opinion, and fact — so that others may be able to replicate this process and reason through their own questions about vaccines, extra-terrestrials, genetic modification, or the first people to arrive in the Americas.
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