Students analyze and interpret graphs to compare the flow of shortwave energy from the Sun toward China over the course of a year on cloudy versus clear days.

Data Carpentry lesson to learn how to use command-line tools to perform quality control, align reads to a reference genome, and identify and visualize between-sample variation. A lot of genomics analysis is done using command-line tools for three reasons: 1) you will often be working with a large number of files, and working through the command-line rather than through a graphical user interface (GUI) allows you to automate repetitive tasks, 2) you will often need more compute power than is available on your personal computer, and connecting to and interacting with remote computers requires a command-line interface, and 3) you will often need to customize your analyses, and command-line tools often enable more customization than the corresponding GUI tools (if in fact a GUI tool even exists). In a previous lesson, you learned how to use the bash shell to interact with your computer through a command line interface. In this lesson, you will be applying this new knowledge to carry out a common genomics workflow - identifying variants among sequencing samples taken from multiple individuals within a population. We will be starting with a set of sequenced reads (.fastq files), performing some quality control steps, aligning those reads to a reference genome, and ending by identifying and visualizing variations among these samples. As you progress through this lesson, keep in mind that, even if you aren’t going to be doing this same workflow in your research, you will be learning some very important lessons about using command-line bioinformatic tools. What you learn here will enable you to use a variety of bioinformatic tools with confidence and greatly enhance your research efficiency and productivity.

A suite of hands-on activities to give students the opportunity to describe the shape and appearance of clouds and learn the types of weather that are associated with clouds. The module includes outdoor observation, group work, and creative/artistic activities.

Data Carpentry lesson to learn to navigate your file system, create, copy, move, and remove files and directories, and automate repetitive tasks using scripts and wildcards with genomics data. Command line interface (OS shell) and graphic user interface (GUI) are different ways of interacting with a computer’s operating system. The shell is a program that presents a command line interface which allows you to control your computer using commands entered with a keyboard instead of controlling graphical user interfaces (GUIs) with a mouse/keyboard combination. There are quite a few reasons to start learning about the shell: For most bioinformatics tools, you have to use the shell. There is no graphical interface. If you want to work in metagenomics or genomics you’re going to need to use the shell. The shell gives you power. The command line gives you the power to do your work more efficiently and more quickly. When you need to do things tens to hundreds of times, knowing how to use the shell is transformative. To use remote computers or cloud computing, you need to use the shell.

Voices of Virginia pulls together stories from oral history collections from across decades and archives to create an all-audio source companion for Virginia’s high school and college students. The "album" is only two hours long, but contains dozens of short oral histories from eyewitnesses to key moments in American history, from the end of the Civil War to the 1980s. The excerpts are downloadable, accessible by smartphone, and accompanied by a transcript. Audio clips are also available on Soundcloud. You’ll also find a brief introduction to each narrator, historical context adapted from experts at Encyclopedia Virginia, American Yawp, and Public Domain sources, and helpful classroom tools like discussion questions, activities, and lesson plans that fit into both the Virginia high school and college U.S. History curriculum. By following the larger national story with narratives from across the Commonwealth, Voices of Virginia grounds students in how history guides and is guided by everyday people and their experiences.

This material is aligned to the History and Social Science Standards for Virginia Public Schools - March 2015.

The collection was curated by Jessica Taylor, Ph.D. with Emily Stewart.

Feedback regarding this collection is welcome at https://bit.ly/VoicesOfVirginia