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METABOLIC: A profiler for microbial genome metabolism, biogeochemistry, and functional networks
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"Advances in genomic laboratory and bioinformatics techniques have allowed us to infer microbial ecology information from genomes. This ability has led to great advances in microbiome science; however, there is not yet a standard comprehensive workflow for functional annotation. Some software tools annotate metabolic functions, but the new tool 'METABOLIC' improves upon this and expands into biogeochemical pathways like the carbon cycle. METABOLIC takes sequence inputs from isolates, metagenome-assembled genomes, or single-cell genomes. The data can be processed through two workflow scales: genome and/or community. The genome-scale workflow annotates the genomes and validates motifs of conserved protein residues. It also analyzes metabolic pathways and calculates the microbial contributions to individual biogeochemical processes and cycles. The community-scale workflow adds to this by first determining the genome abundance in the microbiome..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
05/17/2022
MICROBIOLOGÍA PARA ESTUDIANTES DE ENFERMERÍA
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CC BY-NC-SA
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Microbiología y Biofísica para estudiantes de Enfermería © 2023 by Tania Romacho Romero is licensed under Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International. To view a copy of this license, visit https://creativecommons.org/licenses/by-nc-sa/4.0/

Subject:
Health, Medicine and Nursing
Material Type:
Lecture
Author:
Tania Romacho
Date Added:
08/02/2024
Majors Cellular [or Animal or Plant] (BIOL 211)
Unrestricted Use
CC BY
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This course is the first in a three-course sequence that introduces biology in preparation for advanced study in areas of biological science such as medicine, dentistry, cell biology, microbiology, or veterinary medicine. Biol& 211 introduces students to cellular structure and function. Major topics studied include: energy capture and utilization, cellular reproduction, inheritance, genetic mutation, protein synthesis, gene expression, and biotechnology.

Subject:
Biology
Life Science
Material Type:
Assessment
Full Course
Reading
Syllabus
Provider:
Washington State Board for Community & Technical Colleges
Provider Set:
Open Course Library
Date Added:
05/03/2013
Med Myst: Disease Defenders
Read the Fine Print
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In MedMyst: Disease Defenders, players can choose to train with an epidemiologist, microbiologist, or veterinarian to learn how these experts work as a team to solve infectious disease outbreaks while using the scientific method. Each expert path has its own learning objectives and stresses different parts of the scientific method.

Material Type:
Activity/Lab
Game
Lesson Plan
Provider:
Rice University
Provider Set:
Rice Center for Technology in Teaching and Learning
Date Added:
04/18/2012
Med Myst: Mission 1, Orientation at O.R.B.
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This is an interactive learning adventure for middle school students and has accompanying classroom activities and magazines. In this challenge, students will perform experiments to identify the germ responsible for a fungal disease. Students will follow rules or postulates worked out by Dr. Koch in the late 1800s for establishing whether a specific germ causes a particular infectious disease: 1. The suspected pathogen must be present in every case of the disease; 2. The suspected pathogen must be isolated from the host and grown in pure culture; 3. The disease must be reproduced when a pure culture of the suspected pathogen is inoculated into a healthy susceptible host; 4. The same pathogen must be recovered from the newly infected host. The Germ Theory of Disease holds that germs or microorganisms cause infectious diseases. Funded through the National Center for Research Resources and the National Institute of Allergy and Infectious Diseases.

Subject:
Biology
Life Science
Material Type:
Activity/Lab
Game
Interactive
Lesson Plan
Provider:
Rice University
Provider Set:
Rice Center for Technology in Teaching and Learning
Date Added:
04/18/2012
Med Myst: Mission 2, Peril in Prokaryon
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This is an interactive learning adventure for middle school students and has accompanying classroom activities and magazines. In Mission Two: Peril in Prokaryon, students learn about infectious pathogens and epidemiology while investigating a cholera outbreak.

Material Type:
Activity/Lab
Case Study
Game
Provider:
Rice University
Provider Set:
Rice Center for Technology in Teaching and Learning
Date Added:
04/18/2012
Med Myst: Mission 3, Nemesis in Neuropolis
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This is an interactive learning adventure for middle school students and has accompanying classroom activities and magazines. In Mission Three: Nemesis in Neuropolis, students learn about viruses and vaccines while investigating a smallpox case.

Material Type:
Activity/Lab
Game
Lesson Plan
Provider:
Rice University
Provider Set:
Rice Center for Technology in Teaching and Learning
Date Added:
04/18/2012
Med Myst: Mission 4, Malady in Mabuufo
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This is an interactive learning adventure for middle school students and has accompanying classroom activities and magazines. In Mission Four: Malady in Mabuufo, students learn about malaria, the history of malaria research, and disease vectors.

Material Type:
Activity/Lab
Game
Lesson Plan
Provider:
Rice University
Provider Set:
Rice Center for Technology in Teaching and Learning
Date Added:
04/18/2012
Med Myst: Mission 5, Zero Hour Zoonoses
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This is an interactive learning adventure for middle school students and has accompanying classroom activities and magazines. In Mission Five: Zero Hour Zoonoses, students learn about zoonotic pathogens and the diseases they cause, while trying to prevent a bioterror attack.

Material Type:
Activity/Lab
Game
Lesson Plan
Provider:
Rice University
Provider Set:
Rice Center for Technology in Teaching and Learning
Date Added:
04/18/2012
Medical and molecular virology
Only Sharing Permitted
CC BY-NC-ND
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This book was created for upper division microbiology students studying virology. It will describe the molecular biology and major diseases of virus families that cause significant disease in animals and humans. This book is by no means meant to be exhaustive. In fact, because virology can be so overwhelming, the author has tried to keep the book as simple as possible, while still giving the reader a solid understanding of the molecular mechanisms of viral replication and pathogenesis.

Subject:
Applied Science
Biology
Health, Medicine and Nursing
Life Science
Material Type:
Textbook
Provider:
Colorado State University
Provider Set:
Mountain Scholar
Author:
Erica Suchman
Date Added:
01/25/2021
MedyMyst: Malady in Mabuufo, students learn about malaria, the history of malaria research, and disease vectors.
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This is a problem-based learning adventure game that engages the player in the role of scientist, historian, and detective. At the beginning, the student is presented with a problem that must be solved. During the mission, students conduct field and laboratory investigations with the aid of the MedMyst characters. This mission can be played within one class period (approximately 30 to 45 minutes) and the knowledge gained from this mission will help students understand how infectious diseases are spread. This mission covers vectors, malaria, history of malaria, and immune system. Each mission is a self-contained problem and may be played without reliance on the other missions. Also available in Spanish.

Subject:
Applied Science
Health, Medicine and Nursing
Life Science
Mathematics
Material Type:
Game
Simulation
Provider:
Rice Center for Technology in Teaching and Learning
Provider Set:
Web Adventures: Explore Science One Game at a Time
Author:
Center for Technology in Teaching and Learning
Date Added:
09/28/2011
Microbes at War: The Mechanisms That Drive Infectious Diseases
Conditional Remix & Share Permitted
CC BY-NC-SA
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How can a tick bite cause a meat allergy? And does cranberry juice do anything to help cure a urinary tract infection? To answer these and other questions, we are going to take a dive into the molecular world of microbes. In this class, we will use the primary research literature to explore the molecular interactions between pathogens and their hosts that allow microbes to cause infectious diseases. We will examine the factors that pathogens use to colonize a host and how the host response can impact the outcome of the infection. By the end of the class, students will have both developed critical scientific skills in evaluating scientific literature and an appreciation of the microbes influencing our lives and health every day.
This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.

Subject:
Applied Science
Biology
Genetics
Health, Medicine and Nursing
Life Science
Physical Science
Material Type:
Full Course
Provider:
MIT
Provider Set:
MIT OpenCourseWare
Author:
McLellan, Lisa
Date Added:
09/01/2022
Microbiology
Unrestricted Use
CC BY
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This course is designed to be an introduction to the biology of microorganism. The emphasis is on the

specific properties of microorganisms and their relation to disease.

Subject:
Biology
Life Science
Material Type:
Full Course
Provider:
Greenfield Community College
Author:
Shannon Compton
Date Added:
05/06/2019
Microbiology
Conditional Remix & Share Permitted
CC BY-SA
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This Microbiology textbook, adapted from the Boundless version, is intended to provide health care professionals with a working knowledge of infectious disease. Much of the book is devoted to the structure/function relationships in pathogenic microorganisms and how these relationships are expressed in host-parasite interactions. The text also examines Microbial diseases of specific organ systems as well as host response mechanisms.

Subject:
Biology
Life Science
Material Type:
Textbook
Provider:
BCcampus
Author:
Peggy O'Sullivan
Date Added:
02/25/2022
Microbiology
Unrestricted Use
CC BY
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Microbiology is the study of microorganisms, which are defined as any microscopic organism that comprises either a single cell (unicellular), cell clusters or no cell at all (acellular). This includes eukaryotes, such as fungi and protists, and prokaryotes. Viruses and prions, though not strictly classed as living organisms, are also studied.

Subject:
Biology
Life Science
Material Type:
Textbook
Provider:
LibreTexts
Author:
Gary Kaiser
Date Added:
02/25/2022
Microbiology
Only Sharing Permitted
CC BY-NC-ND
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Microbiology covers the scope and sequence requirements for a single-semester microbiology course for non-majors. The book presents the core concepts of microbiology with a focus on applications for careers in allied health. The pedagogical features of the text make the material interesting and accessible while maintaining the career-application focus and scientific rigor inherent in the subject matter. Microbiology’s art program enhances students’ understanding of concepts through clear and effective illustrations, diagrams, and photographs.

Subject:
Biology
Life Science
Material Type:
Textbook
Provider:
Rice University
Provider Set:
OpenStax College
Author:
Anh-Hue Thi Tu
Ann Auman
Ann Paterson
Ben Rowley
Brian M. Forster
Clifton Franklund
George Pinchuk
Graciela Brelles-Mariño
Mark Schneegurt
Mark Sutherland
Myriam Alhadeff Feldman
Nina Parker
Paul Flowers
Philip Lister
Summer Allen
Date Added:
11/02/2016
Microbiology (BIOL 260)
Unrestricted Use
CC BY
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This on-line open source BIOL& 260 (Microbiology) is a health sciences oriented course in microbiology. It has a laboratory component and the labs are intended to be integrated throughout the course. BIOL& 260 is intended primarily for students going in to health-related professions and will emphasize the human disease and health related areas of microbiology. Areas of microbiology such as environmental, agricultural, taxonomy or astrobiology may be mentioned but not emphasized.

Subject:
Biology
Life Science
Material Type:
Assessment
Full Course
Reading
Syllabus
Provider:
Washington State Board for Community & Technical Colleges
Provider Set:
Open Course Library
Date Added:
05/03/2013
Microbiology Concept Connection Cards
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CC BY-NC
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Microbiology Concept Connections are resources designed to help students learn and connect themes within Microbiology. The material includes downloadable instructions, worksheets, and cards to use in class or during independent study. These were created by Tim Beagley, Salt Lake Community College; Maia Larios, University of St. Thomas-Houston; Adronisha Frazier, Northshore Technical Community College; Ruhul Kuddus, Utah Valley University; and Ross Reedstrom, OpenStax, Rice University.

Subject:
Life Science
Material Type:
Activity/Lab
Date Added:
06/21/2018