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Designing Computational Biology Workflows with Perl
Conditional Remix & Share Permitted
CC BY-NC-SA
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This material introduces Linux File System structures and demonstrates how to use commands to communicate with the operating system through a Terminal program. Basic program structures and system() function of Perl are discussed. A brief introduction to gene-sequencing terminology and file formats are given.

Subject:
Applied Science
Computer Science
Material Type:
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Author:
Esma Yildirim
Yildirim Esma
Date Added:
05/01/2019
Designing Computational Biology Workflows with Perl
Conditional Remix & Share Permitted
CC BY-NC-SA
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This material introduces the AWS console interface, describes how to create an instance on AWS with the VMI provided, connect to that machine instance using the SSH protocol. Once connected, it requires the students to write a script to enter the data folder, which includes gene-sequencing input files and print the first five line of each file remotely. The same exercise can be applied if the VMI is installed on a local machine using virtualization software (e.g. Oracle VirtualBox). In this case, the Terminal program of the VMI can be used to do the exercise.

Subject:
Applied Science
Computer Science
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Author:
Esma Yildirim
Date Added:
06/04/2019
Designing Computational Biology Workflows with Perl
Conditional Remix & Share Permitted
CC BY-NC-SA
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This manual guides the instructor to combine the partial files of the virtual machine image and construct sequencer.ova file. It is accompanied by the partial files of the virtual machine image.

Subject:
Applied Science
Computer Science
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Author:
Esma Yildirim
Date Added:
06/04/2019
"Designing Computational Biology Workflows with Perl Part 2
Conditional Remix & Share Permitted
CC BY-NC-SA
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This material briefly reintroduces the DNA double Helix structure, explains SNP and INDEL mutations in genes and describes FASTA, FASTQ, BAM and VCF file formats. It also explains the index creation, alignment, sorting, marking duplicates and variant calling steps of a simple preprocessing workflow and how to write a Perl script to automate the execution of these steps on a Virtual Machine Image.

Subject:
Applied Science
Computer Science
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Author:
Esma Yildirim
Date Added:
06/04/2019
Designing Computational Biology Workflows with Perl Part 2b
Conditional Remix & Share Permitted
CC BY-NC-SA
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This material introduces the AWS console interface, describes how to create an instance on AWS with the VMI provided and connect to that machine instance using the SSH protocol. Once connected, it requires the students to write a script to automate the tasks to create VCF files from two different sample genomes belonging to E.coli microorganisms by using the FASTA and FASTQ files in the input folder of the virtual machine. The same exercise can be applied if the VMI is installed on a local machine using virtualization software (e.g. Oracle VirtualBox). In this case, the Terminal program of the VMI can be used to do the exercise.

Subject:
Applied Science
Computer Science
Material Type:
Activity/Lab
Lecture Notes
Provider:
CUNY Academic Works
Provider Set:
Queensborough Community College
Author:
Esma Yildirim
Date Added:
06/04/2019
Designing the Digital World
Unrestricted Use
CC BY
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The book offers a blend of theory and practice in guiding readers to apply design thinking principles to solving some of our world’s biggest problems. At the same time, readers are encouraged to become aware of new and emerging technologies that make prototyping and applying solutions a reality.

Subject:
Applied Science
Arts and Humanities
Computer Science
Information Science
Visual Arts
Material Type:
Textbook
Provider:
Open Press at NUI Galway
Author:
Eileen Kennedy
Date Added:
05/31/2021
Design of Dredging Equipment
Conditional Remix & Share Permitted
CC BY-NC-SA
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0.0 stars

Dredging equipment, mechanical dredgers, hydraulic dredgers, boundary conditions, design criteria, instrumentation and automation.

Subject:
Applied Science
Career and Technical Education
Engineering
Maritime Science
Material Type:
Activity/Lab
Lecture Notes
Reading
Provider:
Delft University of Technology
Provider Set:
TU Delft OpenCourseWare
Author:
S.A. Miedema
Date Added:
02/16/2011
Deutsch im Blick
Unrestricted Use
CC BY
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0.0 stars

This textbook includes all 10 chapters of Deutsch im Blick (2nd ed, 2017). Deutsch im Blick is the web-based first-year German program developed and in use at the University of Texas. It is an open access site with free and open multimedia resources, which requires neither password nor fees.

Subject:
Arts and Humanities
Languages
Material Type:
Full Course
Provider:
University of Texas at Austin
Provider Set:
COERLL
Date Added:
10/22/2020
Developing Rubrics
Unrestricted Use
CC BY
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0.0 stars

A unit of study where participants should develop an understanding of the role rubrics play as an assessment tool as well as when and how they should be used. The objective is for participants to recognise the difference between low and high quality rubrics but also feel adequately prepared to begin creating rubrics.

Subject:
Education
Material Type:
Unit of Study
Provider:
Guyana Ministry of Education
Author:
National Center for Educational Resource Development (NCERD)
Date Added:
11/11/2016
Devising
Unrestricted Use
CC BY
Rating
0.0 stars

Devised theatre is a method of theatre-making in which the script or (if it is a predominantly physical work) performance score originates from collaborative, often improvisatory work by a performing ensemble. The ensemble is typically made up of actors, but other categories of theatre practitioner may also be central to this process of generative collaboration, such as visual artists, composers, and choreographers; indeed, in many instances, the contributions of collaborating artists may transcend professional specialization.

Subject:
Arts and Humanities
Performing Arts
Material Type:
Textbook
Provider:
LibreTexts
Author:
Nick Garcia
Date Added:
12/25/2021
Diabetes
Read the Fine Print
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0.0 stars

This patient education program explains what diabetes is, the signs and symptoms, treatment options, hyperglycemia and hypoglycemia, complications, and management of the disease. This resource is a MedlinePlus Interactive Health Tutorial from the National Library of Medicine, designed and developed by the Patient Education Institute.

Subject:
Applied Science
Health, Medicine and Nursing
Material Type:
Lecture
Provider:
National Library of Medicine
Provider Set:
H.E.A.L.
Date Added:
11/17/2003
Diabetes - Eye Complications (Spanish)
Read the Fine Print
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This patient education program explains how diabetes affects eyesight, specifically the prevention and treatment of diabetic retinopathy. It also reviews eye anatomy, other eye problems, and their treatment. This resource is a MedlinePlus Interactive Health Tutorial from the National Library of Medicine, designed and developed by the Patient Education Institute.

Subject:
Applied Science
Health, Medicine and Nursing
Material Type:
Lecture
Provider:
National Library of Medicine
Provider Set:
H.E.A.L.
Date Added:
11/17/2003
Diabetes (Spanish)
Read the Fine Print
Rating
0.0 stars

This patient education program explains what diabetes is, the signs and symptoms, treatment options, hyperglycemia and hypoglycemia, complications, and management of the disease. This resource is a MedlinePlus Interactive Health Tutorial from the National Library of Medicine, designed and developed by the Patient Education Institute.

Subject:
Applied Science
Health, Medicine and Nursing
Material Type:
Lecture
Provider:
National Library of Medicine
Provider Set:
H.E.A.L.
Date Added:
11/17/2003
A Different Road To College
Unrestricted Use
CC BY
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0.0 stars

A Guide For Transitioning To College For Non-traditional Students

Short Description:
A Different Road To College: A Guide For Transitioning Non-Traditional Students is designed to introduce students to the contextual issues of college. Non-traditional students have an ever-growing presence on college campuses, especially community colleges. This open educational resource is designed to engage students in seeing themselves as college students and understanding the complexity of what that means to their lives. Order a print copy: http://www.lulu.com/shop/alise-lamoreaux/a-different-road-to-college-a-guide-for-transitioning-to-college-for-non-traditional-students/paperback/product-23853982.html

Long Description:
A Different Road To College: A Guide For Transitioning Non-Traditional Students is designed to introduce students to the contextual issues of college. Non-traditional students have an ever-growing presence on college campuses, especially community colleges. This open educational resource is designed to engage students in seeing themselves as college students and understanding the complexity of what that means to their lives.

Non-traditional students face critical issues surrounding participation and success in college. These critical issues include, but are not limited to, the following Strategies for managing competing needs on their time Difficulty navigating institutional environments Understanding the culture of college Transitional services not in place to the same degree as for “traditional” students Knowledgeable support systems Personal barriers Unpredictable influences on their schedules Work first, study second priorities Paying for college Underprepared foundation skills (Reading, Writing, Math, Computer Literacy, Human Relations, Oral Communication).

Most textbooks available on the topic of college transition/success today focus on the traditional 18-year old student and the needs of someone living away from home for the first time.The goal of the book is to help students understand how to select the right college for them and then become acquainted with the inner workings and language of college. The book is designed to be a practical guide for first-generation college students as they navigate potentially unfamiliar topics such as understanding the costs of college beyond tuition, navigating college websites, and defining critical language needed to understand communication regarding the context and culture of the college.

Order a print copy: http://www.lulu.com/shop/alise-lamoreaux/a-different-road-to-college-a-guide-for-transitioning-to-college-for-non-traditional-students/paperback/product-23853982.html

Word Count: 21849

ISBN: 978-1-63635-069-1

(Note: This resource's metadata has been created automatically by reformatting and/or combining the information that the author initially provided as part of a bulk import process.)

Subject:
Education
Material Type:
Textbook
Provider:
Open Oregon Educational Resources
Author:
Alise Lamoureaux
Date Added:
06/14/2017
Differentiated Instruction: Maximizing the Learning of All Students
Only Sharing Permitted
CC BY-NC-ND
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0.0 stars

This Module discusses the importance of differentiating three aspects of instruction: content, process (instructional methods), and product (assessment). It explores the student traits—readiness level, interest, and learning preferences—that influence learning (est. completion time: 3 hours).

Subject:
Education
Special Education
Material Type:
Module
Provider:
Vanderbilt University
Provider Set:
IRIS Center
Date Added:
09/05/2018
Differentiating Between Open Access and Open Educational Resources
Unrestricted Use
CC BY
Rating
0.0 stars

Differentiating open access and open educational resource can be a challenge in some contexts. Excellent resources such as "How Open Is It?: A Guide for Evaluating the Openness of Journals" (CC BY) https://sparcopen.org/our-work/howopenisit created by SPARC, PLOS, and OASPA greatly aid us in understanding the relative openness of journals. However, visual resources to conceptually differentiate open educational resources (OER) from resources disseminated using an open access approach do not currently exist. Until now.

This one page introductory guide differentiates OER and OA materials on the basis of purpose (teaching vs. research), method of access (analog and digital), and in terms of the relative freedoms offered by different levels of Creative Commons licenses, the most common open license. Many other open licenses, including open software licenses also exist.

Subject:
Applied Science
Information Science
Material Type:
Diagram/Illustration
Provider:
Virginia Tech
Provider Set:
VTech Works
Author:
Walz Anita
Date Added:
10/16/2019